Institut de recherche biomédicale
     
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    Publications de l'équipe : (Epi-)génétique computationnelle du cancer

    15 publication(s) trouvée(s)

    • Kerdivel, G., Chesnais, V., Becht, E., Toma, A., Cagnard, N., Dumont, F., Rousseau, A., Fenaux, P., Chevret, S., Chapuis, N., Boeva, V., Fridman, W. H., Fontenay, M., Kosmider, O. Lenalidomide-mediated erythroid improvement in non-del(5q) myelodysplastic syndromes is associated with bone marrow immuno-remodeling Leukemia 2018; 32(2):558-562
    • Lopez-Delisle, L., Pierre-Eugene, C., Louis-Brennetot, C., Surdez, D., Raynal, V., Baulande, S., Boeva, V., Grossetete-Lalami, S., Combaret, V., Peuchmaur, M., Delattre, O., Janoueix-Lerosey, I. Activated ALK signals through the ERK-ETV5-RET pathway to drive neuroblastoma oncogenesis Oncogene 2018; 37(11):1417-1429
    • Deveau, P., Colmet Daage, L., Oldridge, D., Bernard, V., Bellini, A., Chicard, M., Clement, N., Lapouble, E., Combaret, V., Boland, A., Meyer, V., Deleuze, J. F., Janoueix-Lerosey, I., Barillot, E., Delattre, O., Maris, J. M., Schleiermacher, G., Boeva, V. QuantumClone: clonal assessment of functional mutations in cancer based on a genotype-aware method for clonal reconstruction Bioinformatics 2018; 34(11):1808-1816
    • Marschall, T., Marz, M., Abeel, T., Dijkstra, L., Dutilh, BE., Ghaffaari, A., Kersey, P., Kloosterman, W.P., Makinen, V;, Novak, A.M., Paten, B., Porubsky, D., Rivals, E., Alkan, C., Baaijens, J.A., De Bakker, P.I.W., Boeva, V., Bonnal, R.J.P., Chiaromonte, F., Chikhi, R., Ciccarelli, F.D., Cijvat, R., Datema, E., Van Duijn, C.M., Eichler, E.E., Ernst, C., Eskin, E., Garrison, E., El-Kebir, M., Klau, G.W., Korbel, J.O., Lameijer, E.W., Langmead, B., Martin, M., Medvedev, P., Mu, J.C, Neerincx, P., Ouwens, K., Peterlongo, P., Pisanti, N., Rahmann, S., Raphael, B., Reinert, K., de Ridder, D., de Ridder, J., Schlesner, M., Schulz-Trieglaff, O;., Sanders, A.D., Sheikhizadeh, S., Shneider, C., Smit, S., Valenzuela, D., Wang, J.Y., Wessels, L., Zhang, Y., Guryev, V., Vandin, F., Ye, K., Schonhuth, A. Computational pan-genomics: status, promises and challenges Brief Bioinform 2018; 19(1):118-135
    • Depuydt, P., Boeva, V., Hocking, T. D., Cannoodt, R., Ambros, I. M., Ambros, P. F., Asgharzadeh, S., Attiyeh, E. F., Combaret, V., Defferrari, R., Fischer, M., Hero, B., Hogarty, M. D., Irwin, M. S., Koster, J., Kreissman, S., Ladenstein, R., Lapouble, E., Laureys, G., London, W. B., Mazzocco, K., Nakagawara, A., Noguera, R., Ohira, M., Park, J. R., Potschger, U., Theissen, J., Tonini, G. P., Valteau-Couanet, D., Varesio, L., Versteeg, R., Speleman, F., Maris, J. M., Schleiermacher, G., De Preter, K. Genomic Amplifications and Distal 6q Loss: Novel Markers for Poor Survival in High-risk Neuroblastoma Patients J Natl Cancer Inst 2018; 110(10):1084-1093
    • Depuydt, P., Koster, J., Boeva, V., Hocking, T. D., Speleman, F., Schleiermacher, G., De Preter, K. Meta-mining of copy number profiles of high-risk neuroblastoma tumors Sci Data 2018; 5:180240
    • Decaesteker, B., Denecker, G., Van Neste, C., Dolman, E. M., Van Loocke, W., Gartlgruber, M., Nunes, C., De Vloed, F., Depuydt, P., Verboom, K., Rombaut, D., Loontiens, S., De Wyn, J., Kholosy, W. M., Koopmans, B., Essing, A. H. W., Herrmann, C., Dreidax, D., Durinck, K., Deforce, D., van Nieuwerburgh, F., Henssen, A., Versteeg, R., Boeva, V., Schleiermacher, G., van Nes, J., Mestdagh, P., Vanhauwaert, S., Schulte, J. H., Westermann, F., Molenaar, J. J., De Preter, K., Speleman, F. TBX2 is a neuroblastoma core regulatory circuitry component enhancing MYCN/FOXM1 reactivation of DREAM targets Nat Commun 2018; 9(1):4866
    • Mathieu, M., Drelon, C., Rodriguez, S., Tabbal, H., Septier, A., Damon-Soubeyrand, C., Dumontet, T., Berthon, A., Sahut-Barnola, I., Djari, C., Batisse-Lignier, M., Pointud, J. C., Richard, D., Kerdivel, G., Calmejane, M. A., Boeva, V., Tauveron, I., Lefrancois-Martinez, A. M., Martinez, A., Val, P. Steroidogenic differentiation and PKA signaling are programmed by histone methyltransferase EZH2 in the adrenal cortex Proc Natl Acad Sci U S A 2018; 115(52):E12265-E12274
    • Perez-Rico, Y. A., Boeva, V., Mallory, A. C., Bitetti, A., Majello, S., Barillot, E., Shkumatava, A. Comparative analyses of super-enhancers reveal conserved elements in vertebrate genomes Genome Res 2017; 27(2):259-268
    • Ashoor, H., Louis-Brennetot, C., Janoueix-Lerosey, I., Bajic, V. B., Boeva, V. HMCan-diff: a method to detect changes in histone modifications in cells with different genetic characteristics Nucleic Acids Res 2017; 45(8):e58
    • Garinet, S., Neou, M., de La Villeon, B., Faillot, S., Sakat, J., Da Fonseca, J. P., Jouinot, A., Le Tourneau, C., Kamal, M., Luscap-Rondof, W., Boeva, V., Gaujoux, S., Vidaud, M., Pasmant, E., Letourneur, F., Bertherat, J., Assie, G. Calling Chromosome Alterations, DNA Methylation Statuses, and Mutations in Tumors by Simple Targeted Next-Generation Sequencing: A Solution for Transferring Integrated Pangenomic Studies into Routine Practice? J Mol Diagn 2017; 19(5):776-787
    • Boeva, V., Louis-Brennetot, C., Peltier, A., Durand, S., Pierre-Eugene, C., Raynal, V., Etchevers, H. C., Thomas, S., Lermine, A., Daudigeos-Dubus, E., Geoerger, B., Orth, M. F., Grunewald, T. G. P., Diaz, E., Ducos, B., Surdez, D., Carcaboso, A. M., Medvedeva, I., Deller, T., Combaret, V., Lapouble, E., Pierron, G., Grossetete-Lalami, S., Baulande, S., Schleiermacher, G., Barillot, E., Rohrer, H., Delattre, O., Janoueix-Lerosey, I. Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries Nat Genet 2017; 49(9):1408-1413
    • Aghdam, R., Baghfalaki, T., Khosravi, P., Saberi Ansari, E. The Ability of Different Imputation Methods to Preserve the Significant Genes and Pathways in Cancer Genomics Proteomics Bioinformatics 2017; 15(6):396-404
    • Boeva, V. Analysis of Genomic Sequence Motifs for Deciphering Transcription Factor Binding and Transcriptional Regulation in Eukaryotic Cells Front Genet 2016; 7:24
    • Deveau, P., Barillot, E., Boeva, V., Zinovyev, A., Bonnet, E. Calculating Biological Module Enrichment or Depletion and Visualizing Data on Large-scale Molecular Maps with ACSNMineR and RNaviCell Packages. The R Journal 2016; 8(2):