Institut de recherche biomédicale
     
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    Publications de l'équipe : (Epi-)génétique computationnelle du cancer

    10 publication(s) trouvée(s)

    • Kerdivel, G., Chesnais, V., Becht, E., Toma, A., Cagnard, N., Dumont, F., Rousseau, A., Fenaux, P., Chevret, S., Chapuis, N., Boeva, V., Fridman, W. H., Fontenay, M., Kosmider, O. Lenalidomide-mediated erythroid improvement in non-del(5q) myelodysplastic syndromes is associated with bone marrow immuno-remodeling Leukemia 2018; 32(2):558-562
    • Marschall, T., Marz, M., Abeel, T., Dijkstra, L., Dutilh, BE., Ghaffaari, A., Kersey, P., Kloosterman, W.P., Makinen, V;, Novak, A.M., Paten, B., Porubsky, D., Rivals, E., Alkan, C., Baaijens, J.A., De Bakker, P.I.W., Boeva, V., Bonnal, R.J.P., Chiaromonte, F., Chikhi, R., Ciccarelli, F.D., Cijvat, R., Datema, E., Van Duijn, C.M., Eichler, E.E., Ernst, C., Eskin, E., Garrison, E., El-Kebir, M., Klau, G.W., Korbel, J.O., Lameijer, E.W., Langmead, B., Martin, M., Medvedev, P., Mu, J.C, Neerincx, P., Ouwens, K., Peterlongo, P., Pisanti, N., Rahmann, S., Raphael, B., Reinert, K., de Ridder, D., de Ridder, J., Schlesner, M., Schulz-Trieglaff, O;., Sanders, A.D., Sheikhizadeh, S., Shneider, C., Smit, S., Valenzuela, D., Wang, J.Y., Wessels, L., Zhang, Y., Guryev, V., Vandin, F., Ye, K., Schonhuth, A. Computational pan-genomics: status, promises and challenges Brief Bioinform 2018; 19(1):
    • Lopez-Delisle, L., Pierre-Eugene, C., Louis-Brennetot, C., Surdez, D., Raynal, V., Baulande, S., Boeva, V., Grossetete-Lalami, S., Combaret, V., Peuchmaur, M., Delattre, O., Janoueix-Lerosey, I. Activated ALK signals through the ERK-ETV5-RET pathway to drive neuroblastoma oncogenesis Oncogene 2018; 37(11):1417-1429
    • Deveau, P., Colmet Daage, L., Oldridge, D., Bernard, V., Bellini, A., Chicard, M., Clement, N., Lapouble, E., Combaret, V., Boland, A., Meyer, V., Deleuze, J. F., Janoueix-Lerosey, I., Barillot, E., Delattre, O., Maris, J. M., Schleiermacher, G., Boeva, V. QuantumClone: clonal assessment of functional mutations in cancer based on a genotype-aware method for clonal reconstruction Bioinformatics 2018; 34(11):1808-1816
    • Perez-Rico, Y. A., Boeva, V., Mallory, A. C., Bitetti, A., Majello, S., Barillot, E., Shkumatava, A. Comparative analyses of super-enhancers reveal conserved elements in vertebrate genomes Genome Res 2017; 27(2):259-268
    • Ashoor, H., Louis-Brennetot, C., Janoueix-Lerosey, I., Bajic, V. B., Boeva, V. HMCan-diff: a method to detect changes in histone modifications in cells with different genetic characteristics Nucleic Acids Res 2017; 45(8):e58
    • Garinet, S., Neou, M., de La Villeon, B., Faillot, S., Sakat, J., Da Fonseca, J. P., Jouinot, A., Le Tourneau, C., Kamal, M., Luscap-Rondof, W., Boeva, V., Gaujoux, S., Vidaud, M., Pasmant, E., Letourneur, F., Bertherat, J., Assie, G. Calling Chromosome Alterations, DNA Methylation Statuses, and Mutations in Tumors by Simple Targeted Next-Generation Sequencing: A Solution for Transferring Integrated Pangenomic Studies into Routine Practice? J Mol Diagn 2017; 19(5):776-787
    • Boeva, V., Louis-Brennetot, C., Peltier, A., Durand, S., Pierre-Eugene, C., Raynal, V., Etchevers, H. C., Thomas, S., Lermine, A., Daudigeos-Dubus, E., Geoerger, B., Orth, M. F., Grunewald, T. G. P., Diaz, E., Ducos, B., Surdez, D., Carcaboso, A. M., Medvedeva, I., Deller, T., Combaret, V., Lapouble, E., Pierron, G., Grossetete-Lalami, S., Baulande, S., Schleiermacher, G., Barillot, E., Rohrer, H., Delattre, O., Janoueix-Lerosey, I. Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries Nat Genet 2017; 49(9):1408-1413
    • Aghdam, R., Baghfalaki, T., Khosravi, P., Saberi Ansari, E. The Ability of Different Imputation Methods to Preserve the Significant Genes and Pathways in Cancer Genomics Proteomics Bioinformatics 2017; 15(6):396-404
    • Boeva, V. Analysis of Genomic Sequence Motifs for Deciphering Transcription Factor Binding and Transcriptional Regulation in Eukaryotic Cells Front Genet 2016; 7:24